A named list of 10 discrete colour palettes suitable for single-cell
cluster visualisation. Access individual palettes via
pal_other$igv, pal_other$ditto, etc.
Format
A named list of palette objects:
- igv
48 colours, IGV genome browser
- ditto
40 colours, dittoSeq (scRNA-seq)
- polychrome
36 colours, max perceptual distinctness
- glasbey
32 colours, Glasbey algorithm
- alphabet
26 colours, Green-Armytage A-Z
- ucsc
26 colours, UCSC genome browser
- kelly
22 colours, Kelly max contrast
- d3
20 colours, D3.js Category20
- simpsons
16 colours, ggsci Simpsons
- trubetskoy
20 colours, Trubetskoy distinct
See also
Other colour palettes:
as_palette(),
pal_get(),
pal_lancet,
pal_list(),
pal_paraSC,
pal_show()
Examples
names(pal_other)
#> [1] "igv" "ditto" "polychrome" "glasbey" "alphabet"
#> [6] "ucsc" "kelly" "d3" "simpsons" "trubetskoy"
pal_other$ditto
#> [1] "#E69F00" "#56B4E9" "#009E73" "#F0E442" "#0072B2" "#D55E00" "#CC79A7"
#> [8] "#666666" "#AD7700" "#1C91D4" "#007756" "#D5C711" "#005685" "#A04700"
#> [15] "#B14380" "#4D4D4D" "#FFBE2D" "#80C7EF" "#00F6B3" "#F4EB71" "#06A5FF"
#> [22] "#FF8320" "#D99BBD" "#8C8C8C" "#FFCB57" "#9AD2F2" "#2CFFC6" "#F6EF8E"
#> [29] "#38B7FF" "#FF9B4D" "#E0AFCA" "#A3A3A3" "#8A5F00" "#1674A9" "#005F45"
#> [36] "#AA9F0D" "#00446B" "#803800" "#8D3666" "#3D3D3D"
pal_other$igv[1:10]
#> [1] "#5050FF" "#CE3D32" "#749B58" "#F0E685" "#466983" "#BA6338" "#5DB1DD"
#> [8] "#802268" "#6BD76B" "#D595A7"
show_color(pal_other$polychrome)
#> #5A5156 #E4E1E3 #F6222E #FE00FA #16FF32 #3283FE #FEAF16 #B00068 #1CFFCE #90AD1C #2ED9FF #DEA0FD #AA0DFE #F8A19F #325A9B #C4451C #1C8356 #85660D #B10DA1 #FBE426 #1CBE4F #FA0087 #FC1CBF #F7E1A0 #C075A6 #782AB6 #AAF400 #BDCDFF #822E1C #B5EFB5 #7ED7D1 #1C7F93 #D85FF7 #683B79 #66B0FF #3B00FB